Adenovirus,

Aspergillus spp,

Brucella,

Bordetella pertussis

Viral Meningitis panel:

Epstein-Barr virus, Cytomegalovirus, Adenovirus, Varicella-zoster virus, HSV1, HSV 2, Enterovirus, Parechovirus, Human Herpes Virus6 (HHV6), Human Herpes Virus7 (HHV7), Parvovirus B19

Clostridium Difficile,

CMV,

EBV,

Group B strep

Bacterial Meningitis panel:

Neisseria meningitidis, Streptococcus pneumoniae Haemophilus influenza, legionella pneumophila, Group B strep., E.coli K1

HBV,

HCV,

HCV genotyping,

HIV,

HSV1&2,

MTB, MTB/NTM:

Mycobacterium tuberculosis and Non tuberculosis Mycobacteria PCR,

MTB/MDR/XDR:

Mycobacterium tuberculosis, Multidrug resistance panel (for fist line: Rifampin-isoniazid and second line drugs: Fluoroquinolones and injectable drugs.

Respiratory panel 33 pathogens:

Influenza A, influenza B, influenza C; influenza A

(H1N1)swl, parainfluenza viruses 1, 2, 3 and 4;

coronaviruses NL63, 229E, OC43 and HKU1; human

metapneumoviruses A and B; rhinovirus;

respiratory syncytial viruses A and B ; adenovirus;

enterovirus; parechovirus; bocavirus; Pneumocystis

jirovecii; Mycoplasma pneumoniae; Chlamydia

pneumoniae; Streptococcus pneumoniae;

Haemophilus influenzae type B; Staphylococcus

aureus; Moraxella catarrhalis; Bordetella spp.*;

Klebsiella pneumoniae; Legionella

pneumophila/Legionella longbeachae; Salmonella species and Haemophilus influenzae

Pneumocystis Jirovecii,

Toxoplasma,

Varicella zoster virus,

Bacterial gastro-enteritis panel:

Campylobacter coli/jejuni /lari, Clostridium difficile,

Escherichia coli verotoxin positives, Salmonella

spp., Shigella spp./ enteroinvasive Escherichia coli,Yersinia enterocolitica

Sexual Transmitted disease panel:

Chlamydia trachomatis, Neisseria gonorrhoeae,

Mycoplasma genitalium, Mycoplasma hominis,

Treponema pallidum, Trichomonas vaginalis, HSV1,

HSV2, Ureaplasma Urealyticum, Ureaplasma

Parvum, Haemophilus Ducreyi

Viral Gastro-enteritis panel:

norovirus, adenovirus, rotavirus, astrovirus,

sapovirus.

Human Papilloma Virus: 28 genotypes

19 high-risk (16, 18, 26, 31, 33, 35, 39, 45, 51, 52,

53, 56, 58, 59, 66, 68, 69, 73, 82), 9 low-risk (6, 11,

40, 42, 43, 44, 54, 61, 70) HPV types

Parasitic Gastro-intestinal panel:

G.lamblia, E.histolytica, Cryptosporidium,

B.hominis, D.Fragilis, C cayetanensis